miRBase entry: mtr-MIR2613

Stem-loop mtr-MIR2613


Accession
MI0011874
Description
Medicago truncatula mtr-MIR2613 precursor miRNA


Sequence

675 reads, 8.0 reads per million, 109 experiments
aaucgaUCUGAGAAGAAGGUUGAUUGGCGGcgguggugguggugugaauacaguuaugaggagaaaaaugguuguuuuuaucggaggaugguggugaacggagaucagCGACGGUCGCCGGUGGUCAAUGGUcggaaagaagagcggug
.((((.(((.....((..((((((((.(((((((.((.(((((.(...(((..((((...((.((((((....)))))).)).....))))..))).....).)))).).)).))))))).))))))))..)).......))).)))).

Structure
a    a   --GAGAA  AG        G       g  g -    g --gaa   ag    --gag  g      g 
 aucg UCU       GA  GUUGAUUG CGGcggu gu g uggu u     uac  uuau     ga aaaaau g
 |||| |||       ||  |||||||| ||||||| || | |||| |     |||  ||||     || ||||||  
 uggc aga       cU  UAACUGGU GCCGCUG CA C acua a     gug  ggua     cu uuuuug u
g    g   agaaagg  GG        G       G  G g    g ggcaa   gu    ggagg  a      u 


Annotation confidence Low
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Genome context
chr5: 9706906-9707054 [-]

Database links

Mature mtr-miR2613-5p

Accession MIMAT0054856
Description Medicago truncatula mtr-miR2613-5p mature miRNA
Sequence 7 - UCUGAGAAGAAGGUUGAUUGGCGG - 30
Evidence experimental
unknown

Mature mtr-miR2613-3p

Accession MIMAT0013327
Description Medicago truncatula mtr-miR2613-3p mature miRNA
Sequence 109 - CGACGGUCGCCGGUGGUCAAUGGU - 132
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796