Stem-loop mtr-MIR2615a

Accession

MI0011876

Description

Medicago truncatula mtr-MIR2615a precursor miRNA

Sequence

cguuuaaaaccucuuguccguauuuuaaaauuguucacguucccuuuuuuucguuguuuuuaccauuuaaaguucguguuuuuuuugucuuuagucauucaaaaaaguuuuuuuuacguuaaaucaacguucgcguuucacgacguuuaaaaacgucucacuuucauuuuuacgacgcauaguuuuuuuuaucguaacgaucacgucaaaaaagagaaggCCUGAUCGCAUUUUAAAAGGCguuuuuuuuauuaauca
..................(((.(((((((((((.((((.(((.(((((((.(((.(((.((((.((..((((...((((.(((((((............)))))))((((((...(((((.....((((....))))....)))))..))))))(((................)))))))....))))..)).)))).))).)))..))))))).))).)..))).)).))))))))).)))................

Structure

cguuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    -uuc    uuuuuuugucuuuagucauucaaaaaa      uuu     aaauc    u 
                  cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag    gugu                           guuuuu   acguu     aacg u
                  ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||    ||||                           ||||||   |||||     ||||  
                  gCG AAAAUUUUA GC AGU  g aag gaaaaaa  gca uag aaug ua  uuuu    uacg                           caaaaa   ugcag     uugc c
--acuaauuauuuuuuuu   G         C  U   CC g   a       cu   c   c    c  uu    uuga    -----cagcauuuuuacuuucacucug      -uu     -cacu    g 

Annotation confidence Not enough data

Genome context

chr5: 3236093-3236350 [-]

Mature mtr-miR2615a

• Accession: MIMAT0013329
• Description: Medicago truncatula mtr-miR2615a mature miRNA
• Sequence: 221 - CCUGAUCGCAUUUUAAAAGGC - 241
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796