Stem-loop mtr-MIR2615c

Accession

MI0011878

Description

Medicago truncatula mtr-MIR2615c precursor miRNA

Sequence

ccguauuuuaaaaugguucacguucccuuuuauucguuuuuuuguaccauuuaaaguuuggguuucuugucuuuagucguucaaaaaguuuuuauuuuuacauuuaaaucaacguucgcaucucacacuuucauuuuuacgucgcauagucuuuuuuuuuaaucguaacgaucacgucaaaaaaagagaaggCCUGAUCGCAUUUUAAAAGGCgu
.(((.(((((((((((.(((.................(((((((.((...((((((...((....))...))))))..)).))))))).......................((((.......................)))).((....(((((((((((...(((.......)))..)))))))))))..)).))).).)))))))))).))).

Structure

c   a          - u   cguucccuuuuauucguuuuuuuguaccauuuaaaguuuggguuucuugucuuuagucguucaaaaaguuuuuauuuuuacauuuaaaucaacguucgcaucucacacuuucauuuuuacguc  auag           aau   aa 
 cgu uuuuaaaaug g uca                                                                                                                           gc    ucuuuuuuuuu   cgu  c
 ||| |||||||||| | |||                                                                                                                           ||    |||||||||||   |||  g
 gCG AAAAUUUUAC C AGU                                                                                                                           Cg    agagaaaaaaa   gca  a
u   G          G U   --------------------------------------------------------------------------------------------------------------------------C  --ga           -cu   cu 

Annotation confidence Not enough data

Genome context

chr7: 2027418-2027632 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2615c

Mature mtr-miR2615c

• Accession: MIMAT0013331
• Description: Medicago truncatula mtr-miR2615c mature miRNA
• Sequence: 193 - CCUGAUCGCAUUUUAAAAGGC - 213
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796