Stem-loop mtr-MIR2616

Accession

MI0011879

Description

Medicago truncatula mtr-MIR2616 precursor miRNA

Sequence

2637 reads, 19.0 reads per million, 111 experiments

ucaaAUUGGGUUUGGUUCGGGCGGAUaaccacggguauggauuuuguugccaugccuaccuccaagcuacuaaagacaccuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauuggaugcaacaucccuaaauuuguuccuuaauuccuauguuauuuccuuuuuuuuauauauacaaaagacgauacaacUCUGUGCUUUGUAGUAAUAACCAAAauuguuaauuuuuuuaauaaugucccgugagucuaacucaguuugu
.(((((((((((.((((((.(.((((......((((((((.........))))))))........(((((.((((.(((...(((......)))......................((((((((((..........)))))))))).(((((...)))))........................(((...((.((((((.((....)).)))))).))...)))...))))))))))))..........((((((((.....))))))))))))).)))))).))))))))))).

Structure

u           U      G C    aaccacggguauggauuuuguugccaugccuaccuccaa     u    a   cuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauuggaugcaacaucccuaaauuuguuccuuaauuccuau   auu  c      u  u 
 caaAUUGGGUU GGUUCG G GGAU                                       gcuac aaag cac                                                                                                         guu   uc uuuuuu ua a
 ||||||||||| |||||| | ||||                                       ||||| |||| |||                                                                                                         |||   || |||||| ||  
 guuugacucaa cugagu c ccug                                       UGAUG UUUC GUG                                                                                                         caa   ag agaaaa au u
u           u      g -    --------uaauaauuuuuuuaauuguuaAAACCAAUAA     -    -   ------------------------------------------------------------------------------------------------------UCU   cau  c      c  a 

Annotation confidence Low

Genome context

chr5: 5651277-5651571 [-]

Mature mtr-miR2616-5p

• Accession: MIMAT0013332
• Description: Medicago truncatula mtr-miR2616-5p mature miRNA
• Sequence: 5 - AUUGGGUUUGGUUCGGGCGGAU - 26
• Evidence: experimental ; 454 [1]

Mature mtr-miR2616-3p

• Accession: MIMAT0054861
• Description: Medicago truncatula mtr-miR2616-3p mature miRNA
• Sequence: 225 - UCUGUGCUUUGUAGUAAUAACCAAA - 249
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796