Stem-loop mtr-MIR1509b

Accession

MI0011880

Description

Medicago truncatula mtr-MIR1509b precursor miRNA

Literature search

2 open access papers mention mtr-MIR1509b
(4 sentences)

Sequence

158654 reads, 1276.0 reads per million, 111 experiments

uugauccauugcauucuuUUAAUCUAGGAAAUUACACUCGagugaccaugagaugaggauauuaucucucucucucucuAGUGUAUUUCCUUGAUUAAAgaaauucauuggaucau
.(((((((.((.(((.((((((((.(((((((.(((((.(((.((....(((((((.....)))))))....)).))).)))))))))))).)))))))).))).)).))))))).

Structure

u       u  c   c        U       U     C   u  ccau       g 
 ugaucca ug auu uuUUAAUC AGGAAAU ACACU Gag ga    gagauga g
 ||||||| || ||| |||||||| ||||||| ||||| ||| ||    ||||||| a
 acuaggu ac uaa gAAAUUAG UCCUUUA UGUGA cuc cu    cucuauu u
u       u  u   a        U       -     u   u  cucu       a 

Annotation confidence High

Genome context

chr3: 22804649-22804764 [+]

Mature mtr-miR1509b-5p

• Accession: MIMAT0013333
• Description: Medicago truncatula mtr-miR1509b-5p mature miRNA
• Sequence: 19 - UUAAUCUAGGAAAUUACACUCG - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR1509b-3p

• Accession: MIMAT0054862
• Description: Medicago truncatula mtr-miR1509b-3p mature miRNA
• Sequence: 80 - AGUGUAUUUCCUUGAUUAAA - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796