miRBase entry: mtr-MIR2617a

Stem-loop mtr-MIR2617a


Accession
MI0011881
Description
Medicago truncatula mtr-MIR2617a precursor miRNA


Sequence

2614 reads, 25.0 reads per million, 111 experiments
auguaGUGUAGCAUGCCCGUUuggguugaacucugauguugaauuaauuauuauuuaauuacuuuuggguAACGGGGUGUUACACUaug
..((((((((((((.(((((...((((.(((......))).))))......(((((((......)))))))))))))))))))))))).

Structure
au            G     Uuggguugaacucugauguugaauuaauuau       uu 
  guaGUGUAGCAU CCCGU                               uauuuaa  a
  |||||||||||| |||||                               |||||||   
  uaUCACAUUGUG GGGCA                               Auggguu  c
-g            -     -------------------------------       uu 


Annotation confidence Low
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Genome context
chr3: 35129122-35129210 [+]

Database links

Mature mtr-miR2617a-5p

Accession MIMAT0013334
Description Medicago truncatula mtr-miR2617a-5p mature miRNA
Sequence 6 - GUGUAGCAUGCCCGUU - 21
Evidence experimental
454 [1]

Mature mtr-miR2617a-3p

Accession MIMAT0054863
Description Medicago truncatula mtr-miR2617a-3p mature miRNA
Sequence 71 - AACGGGGUGUUACACU - 86
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796