Stem-loop mtr-MIR2617c

Accession

MI0011882

Description

Medicago truncatula mtr-MIR2617c precursor miRNA

Sequence

2746 reads, 26.0 reads per million, 111 experiments

cuauuuaagaaauuuugaaaUGUAGUGUAGCAUGCCCGUUugugaauuacugaugaauauuuuauauuuAAUUACUUUUGGGUAACGGGGUGUuacauuugauggacaacuuaaguau
.((((((((.....(((..((..((((((((((.(((((((.((((.......(((((((...)))))))......)))).).))))))))))))))))..))...))))))))))).

Structure

c        aaauu   -aa  GU          G      - g    uuacuga       u 
 uauuuaag     uug   aU  AGUGUAGCAU CCCGUU u ugaa       ugaauau  
 ||||||||     |||   ||  |||||||||| |||||| | ||||       ||||||| u
 augaauuc     aac   ua  uuacauUGUG GGGCAA G GUUU       Auuuaua  
u        -----   agg  gu          -      U G    -UCAUUA       u 

Annotation confidence Low

Genome context

chr3: 9118230-9118347 [+]

Mature mtr-miR2617c-5p

• Accession: MIMAT0013335
• Description: Medicago truncatula mtr-miR2617c-5p mature miRNA
• Sequence: 21 - UGUAGUGUAGCAUGCCCGUU - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2617c-3p

• Accession: MIMAT0054864
• Description: Medicago truncatula mtr-miR2617c-3p mature miRNA
• Sequence: 70 - AAUUACUUUUGGGUAACGGGGUGU - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796