Stem-loop mtr-MIR2617b

Accession

MI0011883

Description

Medicago truncatula mtr-MIR2617b precursor miRNA

Sequence

2987 reads, 28.0 reads per million, 111 experiments

auguaGUGUAGCAUGCCCGUUuggugaauuacucugaugaauauuuuauauuuAAUUACUUUUGGGUAACGGGGUGUuacauuaua
.(((((((((((((.(((((.........(((((((((((((((...)))))).)))).....)))))))))))))))))))))))

Structure

a             G     Uuggugaau     -----    -      u 
 uguaGUGUAGCAU CCCGU         uacuc     ugau gaauau  
 ||||||||||||| |||||         |||||     |||| |||||| u
 auauuacauUGUG GGGCA         AUGGG     AUUA uuuaua  
-             -     ---------     UUUUC    A      u 

Annotation confidence Low

Genome context

chr8: 9343767-9343852 [-]

Mature mtr-miR2617b-5p

• Accession: MIMAT0013336
• Description: Medicago truncatula mtr-miR2617b-5p mature miRNA
• Sequence: 6 - GUGUAGCAUGCCCGUU - 21
• Evidence: experimental ; 454 [1]

Mature mtr-miR2617b-3p

• Accession: MIMAT0054865
• Description: Medicago truncatula mtr-miR2617b-3p mature miRNA
• Sequence: 54 - AAUUACUUUUGGGUAACGGGGUGU - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796