Stem-loop mtr-MIR2618b

Accession

MI0011885

Description

Medicago truncatula mtr-MIR2618b precursor miRNA

Sequence

13046 reads, 136.0 reads per million, 111 experiments

agcauguaccauguacgaauuuggguugcauucugacuagguaucucuuucaaauuauacguaaauauauuuaaaagagauacguauguauauaagagguuagugugaauuuaauuuacuuauguuuAAUCUAGGUUAAUGUAAAUUuaauuuacuuaugaacaauuuagauuaauguaaauucaauuuacuuauguucaauuuaaguuaauguaaauuaaguuaacauauguauauaagagguuagugugaauucaguuuacguacGUUCAAUCUAGGUUAAUGUA
.((((..((((((((((((.(((((((.(((.((((((..((((((((((.(((((((......))).)))).)))))))))).((((((((((.(((..(((.(((((((.(((((((......((((((((((((...((((((...))))))........)))))))))))).))))))).))))))))))..)))...((((.(((((....))))).))))..))))))))))...)))))).)))))))))).)).)))))))........)))..)))).

Structure

a    gu   --------       -  u       g   u      agguaucucuuucaaauuauacguaaauauauuuaaaagagauacg          ----------------------------a   gu   u       u       uuaugu            -----AAU      U 
 gcau  acc        auguacg aa uuggguu cau cugacu                                              uauguauaua                             gag  uag gugaauu aauuuac      uuAAUCUAGGUU        GUAAAU  
 ||||  |||        ||||||| || ||||||| ||| ||||||                                              ||||||||||                             |||  ||| ||||||| |||||||      ||||||||||||        |||||| u
 UGUA  UGG        UGcaugc uu gacuuaa gug gauugg                                              auauauguau                             cuu  auu cauuuaa uuaaaug      aauuagauuuaa        cauuua  
A    AU   AUCUAACU       a  u       -   u      -------------------------------------------aga          acaauugaauuaaauguaauugaauuuaa   gu   -       c       -----u            caaguauu      a 

Annotation confidence Low

Genome context

chr7: 28342357-28342643 [-]

Mature mtr-miR2618b-5p

• Accession: MIMAT0054867
• Description: Medicago truncatula mtr-miR2618b-5p mature miRNA
• Sequence: 128 - AAUCUAGGUUAAUGUAAAUU - 147
• Evidence: experimental ; unknown

Mature mtr-miR2618b-3p

• Accession: MIMAT0013338
• Description: Medicago truncatula mtr-miR2618b-3p mature miRNA
• Sequence: 268 - GUUCAAUCUAGGUUAAUGUA - 287
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796