Stem-loop mtr-MIR2619a

Accession

MI0011886

Description

Medicago truncatula mtr-MIR2619a precursor miRNA

Literature search

1 open access papers mention mtr-MIR2619a
(1 sentences)

Sequence

21956 reads, 223.0 reads per million, 111 experiments

agcccccuaacuaauuaaaauacaaaacaauccccuauguAUUGGAUCUUUGACAGUUUUagcucccaagaccacuuuugauuuagucuuuguugacguggcacccacaauggucgaaacgugauaccucgcuuaagggaugugggugccacgucagcgaagauuaagucaaaagugguuuuggaggccaaaacUGCCAAAGAUCCAAUACAUAGgaggcuguuuuguauuuuaauuuguuaggauguc
.((..((((((.(((((((((((((((((..(((((((((((((((((((((.(((((((.(((.((((((((((((((((((((((((((((((((((((((((((((....((..((.((((....))))))..))..)))))))))))))))))))))))))))))))))))))))))))).))).))))))).))))))))))))))))))).)).))))))))))))))))).))))))..)).

Structure

a  cc      u                 au  -                   A       a   c                                            augg  ga  c    u 
 gc  ccuaac aauuaaaauacaaaaca  cc ccuauguAUUGGAUCUUUG CAGUUUU gcu ccaagaccacuuuugauuuagucuuuguugacguggcacccaca    uc  aa guga a
 ||  |||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    ||  || ||||  
 ug  ggauug uuaauuuuauguuuugu  gg gGAUACAUAACCUAGAAAC GUcaaaa cgg gguuuuggugaaaacugaauuagaagcgacugcaccgugggugu    gg  uu cgcu c
c  ua      u                 -c  a                   C       c   a                                            --ag  aa  -    c 

Annotation confidence Low

Genome context

chr8: 20630374-20630622 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2619a

Mature mtr-miR2619a-5p

• Accession: MIMAT0054868
• Description: Medicago truncatula mtr-miR2619a-5p mature miRNA
• Sequence: 41 - AUUGGAUCUUUGACAGUUUU - 60
• Evidence: experimental ; unknown

Mature mtr-miR2619a-3p

• Accession: MIMAT0013339
• Description: Medicago truncatula mtr-miR2619a-3p mature miRNA
• Sequence: 195 - UGCCAAAGAUCCAAUACAUAG - 215
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796