Stem-loop mtr-MIR2620

Accession

MI0011887

Description

Medicago truncatula mtr-MIR2620 precursor miRNA

Sequence

uacuagaccaggcuuuuguggauuaugaugugacuuugggccaguuugaaaguauuguggggaaugugaccgcauguaacagucugaguuuuagugaugaagaccucccagcggaggggaagaagcacaaucaggcguuacucaucucuguacuuugcagaacagacuccuuauccaaugUUCUGAUAGACACCGGCUCUGCucuuaauguaa
....(((.((((((..(((..((((.(((((......(((..((((((.......(((((.........))))).(((((.((((((......(((.......(((((....)))))........)))..))))))))))).....((((((...)))))).)))))))))......))))).))))..)))..))).))).)))........

Structure

----uacu   c   -   uu   gg    u     gacuuu   cc      aaaguauuguggggaaugugaccgcau     a      guuuua   -augaaga     c 
        aga cag gcu  ugu  auua gaugu      ggg  aguuug                           guaac gucuga      gug        ccucc a
        ||| ||| |||  |||  |||| |||||      |||  ||||||                           ||||| ||||||      |||        |||||  
        ucu GUC CGG  ACA  UAGU UUgua      ucc  ucagac                           cauug cggacu      cac        ggagg g
aauguaau   C   U   CC   GA    C     accuau   --      ------aagacguuucaugucucuacu     -      ----aa   gaagaagg     c 

Annotation confidence Not enough data

Genome context

chr6: 13118436-13118648 [-]

Mature mtr-miR2620

• Accession: MIMAT0013340
• Description: Medicago truncatula mtr-miR2620 mature miRNA
• Sequence: 181 - UUCUGAUAGACACCGGCUCUGC - 202
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796