Stem-loop mtr-MIR2621

Accession

MI0011888

Description

Medicago truncatula mtr-MIR2621 precursor miRNA

Sequence

gauccuaggagcuaaagugaAGCUUGGGCUAGGAAUUUGUGCuaauuaaggcaaggggguuauucuucaucauaaucaauuaguuuuuaaguuuuucuuaauuaugugauuaagugcuuaauuugaauaauugaugauuaugaauuugugagaugaauuucuugcucuaguuuuagggaugaguuuguggaug
.((((.(.(((((....(((((((.((((.(((((((((((((......)))..(((((....))))).(((((((((.((((((((((((((...(((((((....))))))).....)))))))).))))))))))))))).........)))))))))).)))).)))))))......))))).))))).

Structure

g    u g     --aaag       U    U          ----------------------------------------------------------------------------------------------------   aa 
 aucc a gagcu      ugaAGCU GGGC AGGAAUUUGU                                                                                                    GCu  u
 |||| | |||||      ||||||| |||| ||||||||||                                                                                                    |||   
 uagg u uuuga      auuuuga cucg ucuuuaagua                                                                                                    cgg  u
g    - g     guaggg       u    u          gaguguuuaaguauuaguaguuaauaaguuuaauucgugaauuaguguauuaauucuuuuugaauuuuugauuaacuaauacuacuucuuauugggggaa   aa 

Annotation confidence Not enough data

Genome context

chr6: 6977916-6978108 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2621

Mature mtr-miR2621

• Accession: MIMAT0013341
• Description: Medicago truncatula mtr-miR2621 mature miRNA
• Sequence: 21 - AGCUUGGGCUAGGAAUUUGUGC - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796