miRBase entry: mtr-MIR2622

Stem-loop mtr-MIR2622


Accession
MI0011889
Description
Medicago truncatula mtr-MIR2622 precursor miRNA


Sequence

10785 reads, 76.0 reads per million, 111 experiments
auuuugugugccaucgugaacuuAAUUUAGUAUUUAGUCGGUAAAGAcaauagAUAAUAUAUGUAAGGUUCGGGauuaccaccaaaaa
.(((((.(((..(((.(((((((.((....(((((((((......)))..))))))......)).))))))).)))...)))))))).

Structure
a     u   -cc   g       A  --UUAG      --   GG 
 uuuug gug   auc ugaacuu AU      UAUUUA  GUC  U
 ||||| |||   ||| ||||||| ||      ||||||  |||   
 aaaac cac   uaG GCUUGGA UG      AUAgau  cAG  A
a     -   cau   G       A  UAUAUA      aa   AA 


Annotation confidence Low
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Genome context
chr3: 28572579-28572666 [-]

Database links

Mature mtr-miR2622-5p

Accession MIMAT0013342
Description Medicago truncatula mtr-miR2622-5p mature miRNA
Sequence 24 - AAUUUAGUAUUUAGUCGGUAAAGA - 47
Evidence experimental
454 [1]

Mature mtr-miR2622-3p

Accession MIMAT0054870
Description Medicago truncatula mtr-miR2622-3p mature miRNA
Sequence 54 - AUAAUAUAUGUAAGGUUCGGG - 74
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796