Stem-loop mtr-MIR2625

Accession

MI0011893

Description

Medicago truncatula mtr-MIR2625 precursor miRNA

Sequence

1462 reads, 17.0 reads per million, 109 experiments

accaucgugccacgUUACGAUCCAAUCGUGACACGAUCAccucauuaauccuacguggcagcagacaaauuuucauaucguggcacguuccagacuuuaucguggcacaaaauuuccaguggcaaauucuuugucccacguucaacaauCGUGCCACGAGAUGUUCUAAACGUggcacgaug
..((((((((((((((..((.....(((((.((((((...............((((((.....((((((..........(((.((((.............)))).)))..(((((((...)).))))).))))))))))))......)))))).))))).....))..))))))))))))))

Structure

ac              AC  UCCAA     A      CAccucauuaauccu      cagca      -----------uuuucauauc   g    uucca 
  caucgugccacgUU  GA     UCGUG CACGAU               acgugg     gacaaa                     gug cacg     g
  ||||||||||||||  ||     ||||| ||||||               ||||||     ||||||                     ||| ||||     a
  guagcacggUGCAA  CU     AGCAC GUGCua               ugcacc     cuguuu                     cac gugc     c
--              AU  UGUAG     C      ---------acaacu      -----      cuuaaacggugaccuuuaaaa   g    uauuu 

Annotation confidence Medium

Genome context

chr2: 2760406-2760587 [+]

Mature mtr-miR2625-5p

• Accession: MIMAT0013346
• Description: Medicago truncatula mtr-miR2625-5p mature miRNA
• Sequence: 15 - UUACGAUCCAAUCGUGACACGAUCA - 39
• Evidence: experimental ; 454 [1]

Mature mtr-miR2625-3p

• Accession: MIMAT0054872
• Description: Medicago truncatula mtr-miR2625-3p mature miRNA
• Sequence: 150 - CGUGCCACGAGAUGUUCUAAACGU - 173
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796