Stem-loop mtr-MIR2627

Accession

MI0011895

Description

Medicago truncatula mtr-MIR2627 precursor miRNA

Sequence

10465 reads, 105.0 reads per million, 111 experiments

ccuucggcaguuugcuaccgaaguuuuuaggcAACCGGCGGCAGUUAACUgccgaguaaaucugaacuuaaacaaUUUCGGUAGUUAACUGCUGAGGa
.(((((((((((.((((((((((((((((((....(((((((((....)))))).......)))..)))))).)))))))))))).))))))))))).

Structure

c           u            -      cAAC   -------      U 
 cuucggcaguu gcuaccgaaguu uuuagg    CGG       CGGCAG U
 ||||||||||| |||||||||||| ||||||    |||       ||||||  
 GGAGUCGUCAA UGAUGGCUUUaa aaauuc    guc       gccgUC A
a           U            c      --aa   uaaauga      A 

Annotation confidence Low

Genome context

chr2: 5283120-5283217 [-]

Mature mtr-miR2627-5p

• Accession: MIMAT0054874
• Description: Medicago truncatula mtr-miR2627-5p mature miRNA
• Sequence: 33 - AACCGGCGGCAGUUAACU - 50
• Evidence: experimental ; unknown

Mature mtr-miR2627-3p

• Accession: MIMAT0013348
• Description: Medicago truncatula mtr-miR2627-3p mature miRNA
• Sequence: 76 - UUUCGGUAGUUAACUGCUGAGG - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796