Stem-loop mtr-MIR2592h

Accession

MI0011898

Description

Medicago truncatula mtr-MIR2592h precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592h
(2 sentences)

Sequence

36074 reads, 237.0 reads per million, 111 experiments

agguaauucaaacuugccaaacggccauaacucgagcauuucguccagcguucauauuuuuccuuugaaaagauuaaauucuuguuaugcugguuuagaugaagguaUUAAGUGUCAAGGAAUGAACCUCguuucguuggcacuugaauaucaucaucuaaagcaagccuaccaaaaauuuauucuuuucaaaggaaaagcaugaaugcgggacgAAAUGCUUGAGUCCUGUUGUUggcauguuuaaauuuaccc
.(((((...((((.((((((.((((....(((((((((((((((((.((((((((.(((((((((((((((((.((((((.(((.((.((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).))).)).))).)))))).))))))))))))))))).)))))))).)))))))))))))))))...)))))))))).))))....))))).

Structure

a     -uuc    u      a    caua                 a        a                 u      c   u  u   - g         a     -          -       A 
 gguaa    aaac ugccaa cggc    acucgagcauuucgucc gcguucau uuuuuccuuugaaaaga uaaauu uug ua gcu g uuuagauga gguaU UAAGUGUCAA GGAAUGA  
 |||||    |||| |||||| ||||    ||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||| || ||| | ||||||||| ||||| |||||||||| ||||||| C
 ccauu    uuug acggUU GUUG    UGAGUUCGUAAAgcagg cguaagua gaaaaggaaacuuuucu auuuaa aac au cga c aaaucuacu cuaua guucacgguu cuuugCU  
c     uaaa    u      -    -UCC                 g        c                 u      a   c  c   a g         a     a          g       C 

Annotation confidence Low

Genome context

chr3: 36122992-36123246 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592h

Mature mtr-miR2592h-5p

• Accession: MIMAT0054876
• Description: Medicago truncatula mtr-miR2592h-5p mature miRNA
• Sequence: 108 - UUAAGUGUCAAGGAAUGAACCUC - 130
• Evidence: experimental ; unknown

Mature mtr-miR2592h-3p

• Accession: MIMAT0013351
• Description: Medicago truncatula mtr-miR2592h-3p mature miRNA
• Sequence: 216 - AAAUGCUUGAGUCCUGUUGUU - 236
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796