miRBase entry: mtr-MIR2628

Stem-loop mtr-MIR2628


Accession
MI0011909
Description
Medicago truncatula mtr-MIR2628 precursor miRNA


Sequence

6516 reads, 80.0 reads per million, 111 experiments
aggugacaacuaagcuacuCAUGAAAGAAUGAUGAGUAAuuuaccccaaccaauacauauuagccacauaagcacauauauucaugaacuauuuugacuccacaaauaaauugcucauuuucuucAAAGGUAAUUUAGAAAAAACCA
.(((.....(((((.((((..((((.(((.(((((((((((((.............((((..((.......))..)))).............((((......))))))))))))))))))))))))..)))).))))).....))).

Structure
a   gacaa     c    CA    A   U             --------------ccccaaccaauac    ua  ca 
 ggu     cuaag uacu  UGAA GAA GAUGAGUAAuuua                           auau  gc  c
 |||     ||||| ||||  |||| ||| |||||||||||||                           ||||  ||  a
 CCA     GAUUU AUGG  Acuu cuu uuacucguuaaau                           uaua  cg  u
A   AAAAA     A    AA    -   -             aaacaccucaguuuuaucaaguacuua    ca  aa 


Annotation confidence Low
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Genome context
chr6: 13971174-13971320 [+]

Database links

Mature mtr-miR2628-5p

Accession MIMAT0013362
Description Medicago truncatula mtr-miR2628-5p mature miRNA
Sequence 20 - CAUGAAAGAAUGAUGAGUAA - 39
Evidence experimental
454 [1]

Mature mtr-miR2628-3p

Accession MIMAT0054884
Description Medicago truncatula mtr-miR2628-3p mature miRNA
Sequence 126 - AAAGGUAAUUUAGAAAAAACCA - 147
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796