Stem-loop mtr-MIR2629d

Accession

MI0011911

Description

Medicago truncatula mtr-MIR2629d precursor miRNA

Sequence

12986 reads, 132.0 reads per million, 111 experiments

cucgauaguuuacugccgaAGUUUUCCUCGGUAGUUAACUuccauaauucGGCAGUUAACUGCCGAUGagcauuucgguaaauuacuaauaugac
.....((((....(((((((((.(((.(((((((((((((.((.......)).))))))))))))).))).)))))))))....)))).......

Structure

--cucga    uuac         U   C             u  au 
       uagu    ugccgaAGU UUC UCGGUAGUUAACU cc  a
       ||||    ||||||||| ||| ||||||||||||| ||  a
       auca    auggcuuua gaG AGCCGUCAAUUGA GG  u
caguaua    uuaa         c   U             C  cu 

Annotation confidence Low

Genome context

chr3: 15594507-15594601 [+]

Mature mtr-miR2629d-5p

• Accession: MIMAT0013364
• Description: Medicago truncatula mtr-miR2629d-5p mature miRNA
• Sequence: 20 - AGUUUUCCUCGGUAGUUAACU - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2629d-3p

• Accession: MIMAT0054885
• Description: Medicago truncatula mtr-miR2629d-3p mature miRNA
• Sequence: 51 - GGCAGUUAACUGCCGAUG - 68
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796