Stem-loop mtr-MIR2629f

Accession

MI0011915

Description

Medicago truncatula mtr-MIR2629f precursor miRNA

Sequence

22625 reads, 216.0 reads per million, 111 experiments

caggacgcaucggcAGUUAACUGCUGAUGGAAacgaugauaguuaacugccgaaguUUUCCUCGGUAGUUAACUGCcgcugguucuu
.(((((.((.(((((((((((((((((.((((((..((.(((....))).))..)))))).))))))))))))))))).))))))).

Structure

c     g  u                 U      ga  a   u 
 aggac ca cggcAGUUAACUGCUGA GGAAac  ug uag u
 ||||| || ||||||||||||||||| ||||||  || |||  
 ucuug gu gcCGUCAAUUGAUGGCU CUUUug  gc guc a
u     -  c                 C      aa  c   a 

Annotation confidence Low

Genome context

chr5: 20006463-20006549 [-]

Mature mtr-miR2629f-5p

• Accession: MIMAT0054889
• Description: Medicago truncatula mtr-miR2629f-5p mature miRNA
• Sequence: 15 - AGUUAACUGCUGAUGGAA - 32
• Evidence: experimental ; unknown

Mature mtr-miR2629f-3p

• Accession: MIMAT0013368
• Description: Medicago truncatula mtr-miR2629f-3p mature miRNA
• Sequence: 57 - UUUCCUCGGUAGUUAACUGC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796