miRBase entry: mtr-MIR2629g

Stem-loop mtr-MIR2629g


Accession
MI0011916
Description
Medicago truncatula mtr-MIR2629g precursor miRNA


Sequence

19439 reads, 182.0 reads per million, 111 experiments
aauuauggaaucagcuacaguuaauuaucaaagAAAACUUCGACAGUUAAuugccgcggaguuuuaaaauuaaaauuuaacaccucaugcucuuuauuaaaugcauacguuauaucauuuaauaaagaguaugugguguuugauuuaauuuaauuugauauuaacauaaauaaauggcagauaugugcauguguguuaaauuuuaauuuugaaacuccgcggcaguaacugccgaaguUUUCCUCGGUAGUUAACUGCAaaaguuuccucgaua
.(((..((((.......((((((((((((...((((((((((.((((((.(((((((((((((((((((((((((((((((((..((((((((((((((((((.(((.....)))))))))))))))))))))(((((((.((((......)))).))))))).(((......)))(((......)))....))))))))))))))))))))))))))))))))))))))).))))))))))...)))))))))))).......))))..))).

Structure
a   au    ucagcua            aaa          A      A                                 ---------------------------------------------------------cu                  c   c 
 auu  ggaa       caguuaauuauc   gAAAACUUCG CAGUUA uugccgcggaguuuuaaaauuaaaauuuaacac                                                           caugcucuuuauuaaaug aua g
 |||  ||||       ||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||||||||||                                                           |||||||||||||||||| ||| u
 uag  ccuu       GUCAAUUGAUGG   CUUUugaagc gucaau gacggcgccucaaaguuuuaauuuuaaauugug                                                           guaugagaaauaauuuac uau u
a   cu    ugaaaAC            CUC          c      -                                 uguacguguauagacgguaaauaaauacaauuauaguuuaauuuaauuuaguuuguggu                  -   a 


Annotation confidence Low
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Genome context
chr7: 13457501-13457774 [+]

Database links

Mature mtr-miR2629g-5p

Accession MIMAT0054890
Description Medicago truncatula mtr-miR2629g-5p mature miRNA
Sequence 34 - AAAACUUCGACAGUUAA - 50
Evidence experimental
unknown

Mature mtr-miR2629g-3p

Accession MIMAT0013369
Description Medicago truncatula mtr-miR2629g-3p mature miRNA
Sequence 239 - UUUCCUCGGUAGUUAACUGCA - 259
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796