Dead hairpin entry

Stem-loop mtr-MIR2630a

Accession

MI0011917

Description

Medicago truncatula mtr-MIR2630a precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630a
(2 sentences)

Sequence

25878 reads, 232.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuagucaucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauacgaaggaccaaaaccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((.(((((((((((((.((((((((((((...(((((((((...(((((((...((((((..(((((((((.(((...)))..)))))))))............))))))...)))))))...)))))))))...)))))))))))).))))))))))))).))))))))))))))))).)))))))))))))))).

Structure

-                u                 G             a            cau         aaa       cua      ----------uc         -a   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguc  uca  
 |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||  ||| u
 gggacguuuauauuuu uaaaccaaaaccaggaa cauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucag  agu  
a                u                 g             C            acu         cua       aac      caucuuauaaac         gg   u