Stem-loop mtr-MIR2630a

Accession

MI0011917

Description

Medicago truncatula mtr-MIR2630a precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630a
(2 sentences)

Sequence

25878 reads, 232.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuagucaucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauacgaaggaccaaaaccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((.(((((((((((((.((((((((((((...(((((((((...(((((((...((((((..(((((((((.(((...)))..)))))))))............))))))...)))))))...)))))))))...)))))))))))).))))))))))))).))))))))))))))))).)))))))))))))))).

Structure

-                u                 G             a            cau         aaa       cua      ----------uc         -a   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguc  uca  
 |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||  ||| u
 gggacguuuauauuuu uaaaccaaaaccaggaa cauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucag  agu  
a                u                 g             C            acu         cua       aac      caucuuauaaac         gg   u 

Annotation confidence Low

Genome context

chr3: 40621429-40621657 [+]

Mature mtr-miR2630a-5p

• Accession: MIMAT0013370
• Description: Medicago truncatula mtr-miR2630a-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630a-3p

• Accession: MIMAT0054891
• Description: Medicago truncatula mtr-miR2630a-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796