Dead hairpin entry

Stem-loop mtr-MIR2630b

Accession

MI0011918

Description

Medicago truncatula mtr-MIR2630b precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630b
(2 sentences)

Sequence

19857 reads, 180.0 reads per million, 111 experiments

cucugcaaauauaaaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaaauggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggacaaaauccaauaugAAUCAAUUUUACAAGGACUAAAAuaaaauaccaaggaccaaaaccaaauuuuuuauauuuacagaga
(((((.((((((((((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((......((((...((((((..(((((((((((........)))))))))))............))))))...))))......)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)))))))))).))))).

Structure

-     c          u                               a            cau         aaaaug    cua      ----------uc           cgu 
 cucug aaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug      gucc   uaauau            auuuuaguccu   u
 ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||      ||||   ||||||            |||||||||||    
 gagac uuuauauuuu uaaaccaaaaccaggaaccauaaaauAAAAU AGGAACAUUUUA   AAguauaac      cagg   auuaua            uaaaaucaggg   u
a     a          u                               C            ACU         cuaaaa    aac      caucuuauaaac           agu