Stem-loop mtr-MIR2630b

Accession

MI0011918

Description

Medicago truncatula mtr-MIR2630b precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630b
(2 sentences)

Sequence

cucugcaaauauaaaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaaauggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggacaaaauccaauaugaaucaauuuuacaaggacuaaaauaaaauaccaaggaccaaaaccaaauuuuuuauauuuacagaga
(((((.((((((((((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((......((((...((((((..(((((((((((........)))))))))))............))))))...))))......)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)))))))))).))))).

Structure

-     c          u                               a            cau         aaaaug    cua      ----------uc           cgu 
 cucug aaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug      gucc   uaauau            auuuuaguccu   u
 ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||      ||||   ||||||            |||||||||||    
 gagac uuuauauuuu uaaaccaaaaccaggaaccauaaaauaaaau aggaacauuuua   aaguauaac      cagg   auuaua            uaaaaucaggg   u
a     a          u                               c            acu         cuaaaa    aac      caucuuauaaac           agu 

Annotation confidence Not enough data

Genome context

chr1: 552478-552706 [-]

Mature mtr-miR2630b

• Accession: MIMAT0013371
• Description: Medicago truncatula mtr-miR2630b mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796