Stem-loop mtr-MIR2630c

Accession

MI0011919

Description

Medicago truncatula mtr-MIR2630c precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630c
(2 sentences)

Sequence

ccauucaaauaaagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucuuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuaccuauuacaaagaccaaauccaauaugaaucuauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaaauuuuuuauauuugcaguga
.(((((((((((((((..((((((((((((((((((((((((((((((.((((((((((((...(((((((((...((((((....(((((((.(((((((((((........))))))))))).))..........)))))....))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))..))))).)))))).)))).

Structure

c    -      -     ua                              a            cau         aaa      ccua     ----------  c           cgu 
 cauu caaaua aagaa  uuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaau   uucauauug   uugguc    uaaua          uu auuuuaguccu   u
 |||| |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||   |||||||||   ||||||    |||||          || |||||||||||    
 guga guuuau uuuuu  aaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccag    auuau          aa uaaaaucaggg   u
a    c      a     ua                              c            ucu         cua      aaac     ccaucuuaua  c           agu 

Annotation confidence Not enough data

Genome context

chr1: 23684220-23684449 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2630c

Mature mtr-miR2630c

• Accession: MIMAT0013372
• Description: Medicago truncatula mtr-miR2630c mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796