Dead hairpin entry

Stem-loop mtr-MIR2630c

Accession

MI0011919

Description

Medicago truncatula mtr-MIR2630c precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630c
(2 sentences)

Sequence

23152 reads, 197.0 reads per million, 111 experiments

ccauucaaauaaagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucuuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuaccuauuacaaagaccaaauccaauaugaaucuAUUUUACAAGGACUAAAAcaaaauaccaaggaccaaaaccaaaauuuuuuauauuugcaguga
.(((((((((((((((..((((((((((((((((((((((((((((((.((((((((((((...(((((((((...((((((....(((((((.(((((((((((........))))))))))).))..........)))))....))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))..))))).)))))).)))).

Structure

c    -      -     ua                              a            cau         aaa      ccua     ----------  c           cgu 
 cauu caaaua aagaa  uuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaau   uucauauug   uugguc    uaaua          uu auuuuaguccu   u
 |||| |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||   |||||||||   ||||||    |||||          || |||||||||||    
 guga guuuau uuuuu  aaaccaaaaccaggaaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aaccag    auuau          aa uaaaaucaggg   u
a    c      a     ua                              C            ucu         cua      aaac     ccaucuuaua  c           agu