Accession
MI0011920
Description
Medicago truncatula
mtr-MIR2630w precursor miRNA
Literature search
2 open access papers mention mtr-MIR2630w
(2 sentences)
(2 sentences)
Sequence
24632
reads,
220.0
reads per million, 111 experiments
acugcaaauauaaaaaauuuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauagauucauauuggauuuggucuuuguaauagguagaauauuugauuuuagucccucaaaacgAGGACUAAAAUGAAUAUUAUAGggaccaauuucaauaugaaaugauuuuacaaagauuaaaacaaaauaccaaggaccaaaaccaaauauucuuuauuugaaugga
....((((((........(((((((((((((((((((((((((((((((((.(((((((((...(((((((((((.(((((((((((((((..........((.((((((((((.((.....)))))))))))).))))))))))))))))).)))))))))))...))))))))).))))))))))))))))))))))))))))))))).......))))))......
....((((((........(((((((((((((((((((((((((((((((((.(((((((((...(((((((((((.(((((((((((((((..........((.((((((((((.((.....)))))))))))).))))))))))))))))).)))))))))))...))))))))).))))))))))))))))))))))))))))))))).......))))))......
Structure
--acug uaaaaaau c aga u gguagaauau g c a
caaaua uuUGGUUUUGGUCCUUGGUAUUUuguuuuaguc uuguaaaau uucauauugga uuggucuuuguaaua uu auuuuagucc uc a
|||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| || |||||||||| || a
guuuau aaaccaaaaccaggaaccauaaaacaaaauuag aacauuuua aaguauaacuu aaccaggGAUAUUAU AA UAAAAUCAGG Ag a
agguaa -uucuuau a gua u ---------- G - c
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr1: 23684222-23684450 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2630w
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2630w-5p
| Accession | MIMAT0013373 |
| Description | Medicago truncatula mtr-miR2630w-5p mature miRNA |
| Sequence | 21 - UGGUUUUGGUCCUUGGUAUUU - 41 |
| Evidence |
experimental
454 [1] |
Mature mtr-miR2630w-3p
| Accession | MIMAT0054894 |
| Description | Medicago truncatula mtr-miR2630w-3p mature miRNA |
| Sequence | 124 - AGGACUAAAAUGAAUAUUAUAG - 145 |
| Evidence |
experimental
unknown |
References
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