Dead hairpin entry

Stem-loop mtr-MIR2630w

Accession

MI0011920

Description

Medicago truncatula mtr-MIR2630w precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630w
(2 sentences)

Sequence

24632 reads, 220.0 reads per million, 111 experiments

acugcaaauauaaaaaauuuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauagauucauauuggauuuggucuuuguaauagguagaauauuugauuuuagucccucaaaacgAGGACUAAAAUGAAUAUUAUAGggaccaauuucaauaugaaaugauuuuacaaagauuaaaacaaaauaccaaggaccaaaaccaaauauucuuuauuugaaugga
....((((((........(((((((((((((((((((((((((((((((((.(((((((((...(((((((((((.(((((((((((((((..........((.((((((((((.((.....)))))))))))).))))))))))))))))).)))))))))))...))))))))).))))))))))))))))))))))))))))))))).......))))))......

Structure

--acug      uaaaaaau                                 c         aga           u               gguagaauau  g          c  a 
      caaaua        uuUGGUUUUGGUCCUUGGUAUUUuguuuuaguc uuguaaaau   uucauauugga uuggucuuuguaaua          uu auuuuagucc uc a
      ||||||        ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||||||          || |||||||||| || a
      guuuau        aaaccaaaaccaggaaccauaaaacaaaauuag aacauuuua   aaguauaacuu aaccaggGAUAUUAU          AA UAAAAUCAGG Ag a
agguaa      -uucuuau                                 a         gua           u               ----------  G          -  c