Stem-loop mtr-MIR2630x

Accession

MI0011921

Description

Medicago truncatula mtr-MIR2630x precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630x
(2 sentences)

Sequence

35712 reads, 322.0 reads per million, 111 experiments

cccugcaaauauaaaaaaauUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauugauucauauuggauuuggucuuuguaauauguagaauauuugauuuuagucccucaaaaugAGGACUAAAAUGAAUAUUAUAGggaccaauuucaauaugaaaugauuuuacaaggaucaaaacaaaauaccaaggaccaaaaccaaauauucuauauuugcagga
.((((((((((((......((((((((((((((((((((((((((((.(((((((((((((((.(((((((((((.((((((((((((((((..........(.((((((((((.(((...))))))))))))).))))))))))))))))).))))))))))).))))))))))))))).))))))))))))))))))))))))))))......)))))))))))).

Structure

c            aaaaaa                            a               a           u                guagaauauu g          c   a 
 ccugcaaauaua      uUGGUUUUGGUCCUUGGUAUUUuguuuu guccuuguaaaauug uucauauugga uuggucuuuguaauau          u auuuuagucc uca  
 ||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||          | |||||||||| ||| a
 ggacguuuauau      aaccaaaaccaggaaccauaaaacaaaa uaggaacauuuuagu aaguauaacuu aaccaggGAUAUUAUA          A UAAAAUCAGG Agu  
a            cuuaua                            c               a           u                ---------- G          -   a 

Annotation confidence Medium

Genome context

chr1: 27586224-27586451 [+]

Mature mtr-miR2630x-5p

• Accession: MIMAT0013374
• Description: Medicago truncatula mtr-miR2630x-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630x-3p

• Accession: MIMAT0054895
• Description: Medicago truncatula mtr-miR2630x-3p mature miRNA
• Sequence: 124 - AGGACUAAAAUGAAUAUUAUAG - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796