Dead hairpin entry

Stem-loop mtr-MIR2630x

Accession

MI0011921

Description

Medicago truncatula mtr-MIR2630x precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630x
(2 sentences)

Sequence

35712 reads, 322.0 reads per million, 111 experiments

cccugcaaauauaaaaaaauUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauugauucauauuggauuuggucuuuguaauauguagaauauuugauuuuagucccucaaaaugAGGACUAAAAUGAAUAUUAUAGggaccaauuucaauaugaaaugauuuuacaaggaucaaaacaaaauaccaaggaccaaaaccaaauauucuauauuugcagga
.((((((((((((......((((((((((((((((((((((((((((.(((((((((((((((.(((((((((((.((((((((((((((((..........(.((((((((((.(((...))))))))))))).))))))))))))))))).))))))))))).))))))))))))))).))))))))))))))))))))))))))))......)))))))))))).

Structure

c            aaaaaa                            a               a           u                guagaauauu g          c   a 
 ccugcaaauaua      uUGGUUUUGGUCCUUGGUAUUUuguuuu guccuuguaaaauug uucauauugga uuggucuuuguaauau          u auuuuagucc uca  
 ||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||          | |||||||||| ||| a
 ggacguuuauau      aaccaaaaccaggaaccauaaaacaaaa uaggaacauuuuagu aaguauaacuu aaccaggGAUAUUAUA          A UAAAAUCAGG Agu  
a            cuuaua                            c               a           u                ---------- G          -   a