Dead hairpin entry

Stem-loop mtr-MIR2630d

Accession

MI0011923

Description

Medicago truncatula mtr-MIR2630d precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630d
(2 sentences)

Sequence

24761 reads, 214.0 reads per million, 111 experiments

ccauacaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucuuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucacuuuuacAAGGACUAAAACAAAAUACCAAGGAccaaaaccaaauuuucuauauuugcaagga
((...(((((((((((.(((((((((((((((((((((((((((((((.(((((((((((....(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))....))))))))))).))))))))))))))))))))))))))))))).)))))))))))...)).

Structure

-  aua           u                               a           ucau         aaa       cua      ----------uc          -   u 
 cc   caaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaa    uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg   guuuauaucuu uaaaccaaaaccAGGAACCAUAAAACAAAAU AGGAAcauuuu    aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
a  aac           u                               C           cacu         cua       aac      caucuuauaaac          g   u