Stem-loop mtr-MIR2630d

Accession

MI0011923

Description

Medicago truncatula mtr-MIR2630d precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630d
(2 sentences)

Sequence

24761 reads, 214.0 reads per million, 111 experiments

ccauacaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucuuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucacuuuuacAAGGACUAAAACAAAAUACCAAGGAccaaaaccaaauuuucuauauuugcaagga
((...(((((((((((.(((((((((((((((((((((((((((((((.(((((((((((....(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))....))))))))))).))))))))))))))))))))))))))))))).)))))))))))...)).

Structure

-  aua           u                               a           ucau         aaa       cua      ----------uc          -   u 
 cc   caaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaa    uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg   guuuauaucuu uaaaccaaaaccAGGAACCAUAAAACAAAAU AGGAAcauuuu    aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
a  aac           u                               C           cacu         cua       aac      caucuuauaaac          g   u 

Annotation confidence Low

Genome context

chr3: 23128153-23128381 [-]

Mature mtr-miR2630d-5p

• Accession: MIMAT0013376
• Description: Medicago truncatula mtr-miR2630d-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630d-3p

• Accession: MIMAT0054897
• Description: Medicago truncatula mtr-miR2630d-3p mature miRNA
• Sequence: 175 - AAGGACUAAAACAAAAUACCAAGGA - 199
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796