Dead hairpin entry

Stem-loop mtr-MIR2630e

Accession

MI0011924

Description

Medicago truncatula mtr-MIR2630e precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630e
(2 sentences)

Sequence

18628 reads, 174.0 reads per million, 111 experiments

cccugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauauaaaucaauuuuacaaggauuaaaACAAAAUACCAAGGACCAAAAccaaauuuuuuauauuugcaagga
((.((((((((((.((.((((((((((((((((((((((((((((((((((((((((((((.((((.((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))))))))..)))))))))))))))))))))))))))))))))))))))))))).)).)))))))))).)).

Structure

-  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccAAAACCAGGAACCAUAAAACAaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu