Stem-loop mtr-MIR2630g

Accession

MI0011926

Description

Medicago truncatula mtr-MIR2630g precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630g
(2 sentences)

Sequence

11972 reads, 115.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuucaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacaaaaaucaaauauuuuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuucaaagacuaaaauaaaauacagaggaccaaaaccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((.(((((((((((...((.(((.(((((...(((((((((...(((((((...((((((..(((((.(((((((...))).)))).)))))............))))))...)))))))...)))))))))...))))).))).))...))))))))))).))))))))))))))))).)))))))))))))))).

Structure

-                u                 G           caa  c   u     cau         aaa       cua      ----------uc     a    -   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuu   uc uug aaaau   uucauauug   uuggucc   uaauau            auuuu gucc uca  
 |||||||||||||||| ||||||||||||||||| |||||||||||   || ||| |||||   |||||||||   |||||||   ||||||            ||||| |||| ||| u
 gggacguuuauauuuu uaaaccaaaaccaggag cauaaaauaaa   ag aac uuuua   AAGUAUAAC   AACCAGG   auuaua            uaaaa cagg agu  
a                u                 a           auc  a   u     ACU         CUA       AAc      cauuuuauaaac     a    g   u 

Annotation confidence Low

Genome context

chr3: 28083847-28084075 [+]

Mature mtr-miR2630g-5p

• Accession: MIMAT0013379
• Description: Medicago truncatula mtr-miR2630g-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630g-3p

• Accession: MIMAT0054900
• Description: Medicago truncatula mtr-miR2630g-3p mature miRNA
• Sequence: 144 - AAGGACCAAAUCCAAUAUGAAUCA - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796