Dead hairpin entry

Stem-loop mtr-MIR2630h

Accession

MI0011927

Description

Medicago truncatula mtr-MIR2630h precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630h
(2 sentences)

Sequence

25975 reads, 219.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauucuuguaaaaucauuucauauugaaauuggucccuauaauauucuuuuuaguccucauuuugagggacuaaaaucaaauauucuacguauuacaaggaucaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccaaaaccaaauuuccuauauuugcaggga
((((((((((((((...(((((((((((((((((((((((((((((((.((((((((((((...(((((((((...(((((((...((((((...((((((((((((...))).))))))))).............))))))...)))))))...)))))))))...)))))))))))).)))))))))))))))))))))))))))))))...)))))))))))))).

Structure

-              aau                               a            cau         aaa       cua      ----------ucu         -   u 
 cccugcaaauauag   auuUGGUUUUGGUCCUUGGUAUUUuguuuua uucuuguaaaau   uucauauug   uuggucc   uaauau             uuuuagucc uca  
 ||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||             ||||||||| ||| u
 gggacguuuauauc   uaaaccaaaaccaggaaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aacuagg   auuaug             aaaaucagg agu  
a              cuu                               C            acu         cua       aac      caucuuauaaacu         g   u