Stem-loop mtr-MIR2630h

Accession

MI0011927

Description

Medicago truncatula mtr-MIR2630h precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630h
(2 sentences)

Sequence

25975 reads, 219.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauucuuguaaaaucauuucauauugaaauuggucccuauaauauucuuuuuaguccucauuuugagggacuaaaaucaaauauucuacguauuacaaggaucaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccaaaaccaaauuuccuauauuugcaggga
((((((((((((((...(((((((((((((((((((((((((((((((.((((((((((((...(((((((((...(((((((...((((((...((((((((((((...))).))))))))).............))))))...)))))))...)))))))))...)))))))))))).)))))))))))))))))))))))))))))))...)))))))))))))).

Structure

-              aau                               a            cau         aaa       cua      ----------ucu         -   u 
 cccugcaaauauag   auuUGGUUUUGGUCCUUGGUAUUUuguuuua uucuuguaaaau   uucauauug   uuggucc   uaauau             uuuuagucc uca  
 ||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||             ||||||||| ||| u
 gggacguuuauauc   uaaaccaaaaccaggaaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aacuagg   auuaug             aaaaucagg agu  
a              cuu                               C            acu         cua       aac      caucuuauaaacu         g   u 

Annotation confidence Low

Genome context

chr5: 3355277-3355505 [+]

Mature mtr-miR2630h-5p

• Accession: MIMAT0013380
• Description: Medicago truncatula mtr-miR2630h-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630h-3p

• Accession: MIMAT0054901
• Description: Medicago truncatula mtr-miR2630h-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796