Stem-loop mtr-MIR2630i

Accession

MI0011928

Description

Medicago truncatula mtr-MIR2630i precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630i
(2 sentences)

Sequence

21396 reads, 184.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauugguccauauaauauucauuuuaguccucauauugagggucuaaaaucaaauauucuacauacuacaagaacaaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccaaaaccaaauuuuuaauauuugcagga
.(((((((((((.(((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((....((((...((.((((((.(((((((((((((...)))))).)))))))..)))))).))...))))...((......)))))))))))...)))))))))))).))))))))))))))))))))))))))))))).))).))))))))))).

Structure

c           a   u                               a            cau         ---------aaau    cca  u      -c       -      u 
 ccugcaaauau gaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug             uggu   ua aauauu  auuuuag uccuca  
 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||             ||||   || ||||||  ||||||| |||||| a
 ggacguuuaua uuu uaaaccaaaaccaggaaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac             auca   au uuauaa  uaaaauc gggagu  
a           a   u                               C            acu         cuaaaacaagaac    uac  c      ac       u      u 

Annotation confidence Low

Genome context

chr4: 1908805-1909032 [-]

Mature mtr-miR2630i-5p

• Accession: MIMAT0013381
• Description: Medicago truncatula mtr-miR2630i-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630i-3p

• Accession: MIMAT0054902
• Description: Medicago truncatula mtr-miR2630i-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796