Dead hairpin entry

Stem-loop mtr-MIR2630j

Accession

MI0011929

Description

Medicago truncatula mtr-MIR2630j precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630j
(2 sentences)

Sequence

16673 reads, 157.0 reads per million, 111 experiments

cccugcaaauauaaaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuacaaagacuaaaacaaaauaccgaggaccaaaaucaaauuuuuuauauuuguaagga
((.(((((((((((((.(((((((((((((((((((((((((((((((.((.(((((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...))))))))).)).))))))))))))))))))))))))))))))).))))))))))))).)).

Structure

-  c             u                               a  c         cau         aaa       cua      ----------uc          -   u 
 cc ugcaaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg auguuuauauuuu uaaacuaaaaccaggagccauaaaacaaaau ag aacauuuua   AAGUAUAAC   AACCAGG   auuaua            uaaaaucagg agu  
a  a             u                               c  a         ACU         CUA       AAc      caucuuauaaac          g   u