Stem-loop mtr-MIR2630k

Accession

MI0011930

Description

Medicago truncatula mtr-MIR2630k precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630k
(2 sentences)

Sequence

16735 reads, 157.0 reads per million, 111 experiments

cccugcaaauauaaaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuacaaagacuaaaacaaaauaccgaggaccaaaaucaaauuuuuuauauuuguaagga
((.(((((((((((((.(((((((((((((((((((((((((((((((.((.(((((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...))))))))).)).))))))))))))))))))))))))))))))).))))))))))))).)).

Structure

-  c             u                               a  c         cau         aaa       cua      ----------uc          -   u 
 cc ugcaaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg auguuuauauuuu uaaacuaaaaccaggagccauaaaacaaaau ag aacauuuua   AAGUAUAAC   AACCAGG   auuaua            uaaaaucagg agu  
a  a             u                               c  a         ACU         CUA       AAc      caucuuauaaac          g   u 

Annotation confidence Low

Genome context

chr4: 9694217-9694445 [-]

Mature mtr-miR2630k-5p

• Accession: MIMAT0013383
• Description: Medicago truncatula mtr-miR2630k-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630k-3p

• Accession: MIMAT0054904
• Description: Medicago truncatula mtr-miR2630k-3p mature miRNA
• Sequence: 144 - AAGGACCAAAUCCAAUAUGAAUCA - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796