Stem-loop mtr-MIR2630l

Accession

MI0011931

Description

Medicago truncatula mtr-MIR2630l precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630l
(2 sentences)

Sequence

13102 reads, 122.0 reads per million, 111 experiments

cucugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauugguccuuauaauauucauuuuaguccucauuuggaaggacuaaaaucaaauauucuacauauuacaaggaccaaauucaauauaaaucaauuuuacaagaacuuaaACAAAAUACCAAGGACCAAAAccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((((((((((((((.....((((((((((.((((.((((((((.(((((((((.((((((..(((((((((((........)))))))))))............)))))).))))))))).))))))))))))..)))))))))).....))))))))))))))))))))))))))))).)))))))))))))))).

Structure

-                u                             uaauc          -c    c        a         a      ----------uc           cau 
 cucugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuu     cuuguaaaau  auuu auauugaa uugguccuu uaauau            auuuuaguccu   u
 |||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||  |||| |||||||| ||||||||| ||||||            |||||||||||    
 gggacguuuauauuuu uaaaccAAAACCAGGAACCAUAAAACAaa     gaacauuuua  uaaa uauaacuu aaccaggaa auuaua            uaaaaucagga   u
a                u                             uucaa          ac    -        a         c      caucuuauaaac           agg 

Annotation confidence Low

Genome context

chr5: 15543381-15543609 [+]

Mature mtr-miR2630l-5p

• Accession: MIMAT0013384
• Description: Medicago truncatula mtr-miR2630l-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630l-3p

• Accession: MIMAT0054905
• Description: Medicago truncatula mtr-miR2630l-3p mature miRNA
• Sequence: 185 - ACAAAAUACCAAGGACCAAAA - 205
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796