Dead hairpin entry

Stem-loop mtr-MIR2630l

Accession

MI0011931

Description

Medicago truncatula mtr-MIR2630l precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630l
(2 sentences)

Sequence

13102 reads, 122.0 reads per million, 111 experiments

cucugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauugguccuuauaauauucauuuuaguccucauuuggaaggacuaaaaucaaauauucuacauauuacaaggaccaaauucaauauaaaucaauuuuacaagaacuuaaACAAAAUACCAAGGACCAAAAccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((((((((((((((.....((((((((((.((((.((((((((.(((((((((.((((((..(((((((((((........)))))))))))............)))))).))))))))).))))))))))))..)))))))))).....))))))))))))))))))))))))))))).)))))))))))))))).

Structure

-                u                             uaauc          -c    c        a         a      ----------uc           cau 
 cucugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuu     cuuguaaaau  auuu auauugaa uugguccuu uaauau            auuuuaguccu   u
 |||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||  |||| |||||||| ||||||||| ||||||            |||||||||||    
 gggacguuuauauuuu uaaaccAAAACCAGGAACCAUAAAACAaa     gaacauuuua  uaaa uauaacuu aaccaggaa auuaua            uaaaaucagga   u
a                u                             uucaa          ac    -        a         c      caucuuauaaac           agg