Stem-loop mtr-MIR2630m

Accession

MI0011932

Description

Medicago truncatula mtr-MIR2630m precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630m
(2 sentences)

Sequence

uccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauuaaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucgacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaauauucuauauuugcaaggac
((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((...((((((((....(((((((...(((((((((((((((((((((...))).)))))))))).........)).))))))...)))))))....))))))))...)))))))))))).)))))))))))))))))))))))))))))))))))))))))))).)))).

Structure

-    -                                            a            cau        aaaa       cua      -  ---------          -   u 
 uccu gcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau uc         auuuuagucc uca  
 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||    |||||||   |||||| ||         |||||||||| ||| u
 agga cguuuauaucuuauaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua ag         uaaaaucagg agu  
c    a                                            c            acu        ccua       aac      c  cuuauaaac          g   u 

Annotation confidence Not enough data

Genome context

chr5: 18370582-18370811 [-]

Mature mtr-miR2630m

• Accession: MIMAT0013385
• Description: Medicago truncatula mtr-miR2630m mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796