Stem-loop mtr-MIR2630n

Accession

MI0011933

Description

Medicago truncatula mtr-MIR2630n precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630n
(2 sentences)

Sequence

22029 reads, 198.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaaucggucccuauaauauucauuuuaguccucauuuugaaugacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaagaccaaaaccaaauauuuuauauuugcaggga
(((((((((((((((((((((((((((((((.((((((((((((((((.((((((((((((...(((((((((.....(((((...((((((..(((((((((.(((...)))..)))))))))............))))))...))))).....)))))))))...)))))))))))).)))))))))))))))).))))))))))))))))))))))))))))))).

Structure

-                               C                a            cau         aaauc     cua      ----------uc         -c   u 
 cccugcaaauauagaauauuUGGUUUUGGUC UUGGUAUUUuguuuua uccuuguaaaau   uucauauug     ggucc   uaauau            auuuuaguc  uca  
 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||||     |||||   ||||||            |||||||||  ||| u
 gggacguuuauauuuuauaaaccaaaaccag aaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac     ccagg   auuaua            uaaaaucag  agu  
a                               a                C            acu         cuaaa     aac      caucuuauaaac         ua   u 

Annotation confidence Low

Genome context

chr5: 5676117-5676345 [-]

Mature mtr-miR2630n-5p

• Accession: MIMAT0013386
• Description: Medicago truncatula mtr-miR2630n-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630n-3p

• Accession: MIMAT0054907
• Description: Medicago truncatula mtr-miR2630n-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796