Dead hairpin entry

Stem-loop mtr-MIR2630n

Accession

MI0011933

Description

Medicago truncatula mtr-MIR2630n precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630n
(2 sentences)

Sequence

22029 reads, 198.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaaucggucccuauaauauucauuuuaguccucauuuugaaugacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaagaccaaaaccaaauauuuuauauuugcaggga
(((((((((((((((((((((((((((((((.((((((((((((((((.((((((((((((...(((((((((.....(((((...((((((..(((((((((.(((...)))..)))))))))............))))))...))))).....)))))))))...)))))))))))).)))))))))))))))).))))))))))))))))))))))))))))))).

Structure

-                               C                a            cau         aaauc     cua      ----------uc         -c   u 
 cccugcaaauauagaauauuUGGUUUUGGUC UUGGUAUUUuguuuua uccuuguaaaau   uucauauug     ggucc   uaauau            auuuuaguc  uca  
 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||||     |||||   ||||||            |||||||||  ||| u
 gggacguuuauauuuuauaaaccaaaaccag aaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac     ccagg   auuaua            uaaaaucag  agu  
a                               a                C            acu         cuaaa     aac      caucuuauaaac         ua   u