Dead hairpin entry

Stem-loop mtr-MIR2630o

Accession

MI0011934

Description

Medicago truncatula mtr-MIR2630o precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630o
(2 sentences)

Sequence

21659 reads, 197.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuauaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaauuaAUUUUACAAGGACUAAAAcaaaauaucaaggaucaaaaccaaauuuuuuauauuugcagga
.(((((((((((((((.(((((((((((((((((((((((((((((((.(((((.((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...)))))).))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure

c               u                               a     a      cau         aaa       cua      ----------uc          -   u 
 ccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuu uaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 ggacguuuauauuuu uaaaccaaaacuaggaacuauaaaacAAAAU AGGAA AUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
a               u                               C     C      auu         cua       aac      caucuuauaaac          g   u