Stem-loop mtr-MIR2630o

Accession

MI0011934

Description

Medicago truncatula mtr-MIR2630o precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630o
(2 sentences)

Sequence

21659 reads, 197.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuauaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaauuaAUUUUACAAGGACUAAAAcaaaauaucaaggaucaaaaccaaauuuuuuauauuugcagga
.(((((((((((((((.(((((((((((((((((((((((((((((((.(((((.((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...)))))).))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure

c               u                               a     a      cau         aaa       cua      ----------uc          -   u 
 ccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuu uaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 ggacguuuauauuuu uaaaccaaaacuaggaacuauaaaacAAAAU AGGAA AUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
a               u                               C     C      auu         cua       aac      caucuuauaaac          g   u 

Annotation confidence Low

Genome context

chr5: 6240185-6240412 [+]

Mature mtr-miR2630o-5p

• Accession: MIMAT0013387
• Description: Medicago truncatula mtr-miR2630o-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630o-3p

• Accession: MIMAT0054908
• Description: Medicago truncatula mtr-miR2630o-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796