Stem-loop mtr-MIR2630p

Accession

MI0011935

Description

Medicago truncatula mtr-MIR2630p precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630p
(2 sentences)

Sequence

19831 reads, 180.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaauaaaauauucuacauauuacaaggaccaaauccaauaugauccaAUUUUACAAGGACUAAAAcaaaauaccaaugaccaaaaaccaaauuuuuuauauuugcuugga
((..((((((((((((.((((((((((((((.((((((((((((((((.((((((((((((....((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...))))))))....)))))))))))).)))))))))))))))).)))).)))))))))).))))))))))))..)).

Structure

-  cu            u          -    C                a            cauu        aaa       cua      ----------uc          -   u 
 cc  gcaaauauagaa auuUGGUUUU GGUC UUGGUAUUUuguuuua uccuuguaaaau    ucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||  |||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||    ||||||||   |||||||   ||||||            |||||||||| ||| u
 gg  cguuuauauuuu uaaaccaaaa ccag aaccauaaaacAAAAU AGGAACAUUUUA    aguauaac   aaccagg   auuaua            uaaaaucagg agu  
a  uu            u          a    u                C            accu        cua       aac      caucuuauaaaa          g   u 

Annotation confidence Low

Genome context

chr4: 4799279-4799508 [+]

Mature mtr-miR2630p-5p

• Accession: MIMAT0013388
• Description: Medicago truncatula mtr-miR2630p-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630p-3p

• Accession: MIMAT0054909
• Description: Medicago truncatula mtr-miR2630p-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796