Stem-loop mtr-MIR2630q

Accession

MI0011936

Description

Medicago truncatula mtr-MIR2630q precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630q
(2 sentences)

Sequence

ccaugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaauuuuuuauauuugcaggg
((.((((((((((.((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)).)))))))))))).

Structure

-  a          u  u                               a            cau         aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucaggg   u
g  -          u  u                               c            acu         cua       aac      caucuuauaaac           agu 

Annotation confidence Not enough data

Genome context

chr6: 18839111-18839338 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2630q

Mature mtr-miR2630q

• Accession: MIMAT0013389
• Description: Medicago truncatula mtr-miR2630q mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796