Dead hairpin entry

Stem-loop mtr-MIR2630q

Accession

MI0011936

Description

Medicago truncatula mtr-MIR2630q precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630q
(2 sentences)

Sequence

30142 reads, 264.0 reads per million, 111 experiments

ccaugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccaaaaccaaauuuuuuauauuugcaggg
((.((((((((((.((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)).)))))))))))).

Structure

-  a          u  u                               a            cau         aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacAAAAU AGGAACAUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucaggg   u
g  -          u  u                               C            acu         cua       aac      caucuuauaaac           agu