Stem-loop mtr-MIR2630r

Accession

MI0011937

Description

Medicago truncatula mtr-MIR2630r precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630r
(2 sentences)

Sequence

17347 reads, 159.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauguugaaauuggucccuauaauauucauuuuagucuucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauucaauaugaaucaauuuuacaaagacuaaAACAAAAUACCAAGGACCAAAAucaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((((((((((((((((.((.(((((((((...(((((((((((.(((((((...((((((..(((((((((((((...))).))))))))))............))))))...))))))).)))))))))))...))))))))).)).))))))))))))))))))))))))))))))).)))))))))))))))).

Structure

-                u                               a  c         cau           a       cua      ----------uc          -   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauguugaa uuggucc   uaauau            auuuuagucu uca  
 |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   ||||||||||| |||||||   ||||||            |||||||||| ||| u
 gggacguuuauauuuu uaaacuAAAACCAGGAACCAUAAAACAAaau ag aacauuuua   aaguauaacuu aaccagg   auuaua            uaaaaucagg agu  
a                u                               c  a         acu           a       aac      caucuuauaaac          g   u 

Annotation confidence Low

Genome context

chr6: 11208478-11208706 [-]

Mature mtr-miR2630r-5p

• Accession: MIMAT0013390
• Description: Medicago truncatula mtr-miR2630r-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630r-3p

• Accession: MIMAT0054911
• Description: Medicago truncatula mtr-miR2630r-3p mature miRNA
• Sequence: 184 - AACAAAAUACCAAGGACCAAAA - 205
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796