Dead hairpin entry

Stem-loop mtr-MIR2630r

Accession

MI0011937

Description

Medicago truncatula mtr-MIR2630r precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630r
(2 sentences)

Sequence

17347 reads, 159.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauguugaaauuggucccuauaauauucauuuuagucuucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauucaauaugaaucaauuuuacaaagacuaaAACAAAAUACCAAGGACCAAAAucaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((((((((((((((((.((.(((((((((...(((((((((((.(((((((...((((((..(((((((((((((...))).))))))))))............))))))...))))))).)))))))))))...))))))))).)).))))))))))))))))))))))))))))))).)))))))))))))))).

Structure

-                u                               a  c         cau           a       cua      ----------uc          -   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauguugaa uuggucc   uaauau            auuuuagucu uca  
 |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   ||||||||||| |||||||   ||||||            |||||||||| ||| u
 gggacguuuauauuuu uaaacuAAAACCAGGAACCAUAAAACAAaau ag aacauuuua   aaguauaacuu aaccagg   auuaua            uaaaaucagg agu  
a                u                               c  a         acu           a       aac      caucuuauaaac          g   u