Stem-loop mtr-MIR2630s

Accession

MI0011938

Description

Medicago truncatula mtr-MIR2630s precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630s
(2 sentences)

Sequence

18728 reads, 166.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauuaaaauuggucccuauaauauucauuuuaguucucauuuugagggacuaaaauuaaauauucuacauauuacaaggaccaaaucgaauaugaaucaAUUUUACAAGGACUAAAAcaaaacaccaaggaccaaaacccaauuuuuuauauuugcaggga
((((((((((((((((.(((.((((((((((((((((.((((((((((.((((((((((((...((((((((....(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))....))))))))...)))))))))))).)))))))))).)))))))))))))))).))).)))))))))))))))).

Structure

-                u   U                A          a            cau        aaaa       cua      ----------uc          -   u 
 cccugcaaauauagaa auu GGUUUUGGUCCUUGGU UUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau            auuuuaguuc uca  
 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||   ||||||||    |||||||   ||||||            |||||||||| ||| u
 gggacguuuauauuuu uaa ccaaaaccaggaacca aaaacAAAAU AGGAACAUUUUA   aaguauaa    aaccagg   auuaua            uaaaaucagg agu  
a                u   c                c          C            acu        gcua       aac      caucuuauaaau          g   u 

Annotation confidence Low

Genome context

chr7: 31925699-31925927 [+]

Mature mtr-miR2630s-5p

• Accession: MIMAT0013391
• Description: Medicago truncatula mtr-miR2630s-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630s-3p

• Accession: MIMAT0054912
• Description: Medicago truncatula mtr-miR2630s-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796