Stem-loop mtr-MIR2630t

Accession

MI0011939

Description

Medicago truncatula mtr-MIR2630t precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630t
(2 sentences)

Sequence

17103 reads, 158.0 reads per million, 111 experiments

cccugcaaaaauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucuuauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuacaaggaauaaaacaaaauacaaagguccaaaacccaauuuuuuauauuugcaggga
(((((((((.((((((.(((.((((((((.((((.(((((((((((((.((((((((((((...(((.(((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))).)))...)))))))))))).))))))))))))).)))).)))))))).))).)))))).))))))))).

Structure

-         a      u   U        U    G             a            cau   u     aaa       cua      ----------uc           cgu 
 cccugcaaa auagaa auu GGUUUUGG CCUU GUAUUUuguuuua uccuuguaaaau   uuc uauug   uuggucc   uaauau            auuuuaguccu   u
 ||||||||| |||||| ||| |||||||| |||| ||||||||||||| ||||||||||||   ||| |||||   |||||||   ||||||            |||||||||||    
 gggacguuu uauuuu uaa ccaaaacc ggaa cauaaaacaaaau aggaacauuuua   AAG AUAAC   AACCAGG   auuaua            uaaaaucaggg   u
a         a      u   c        u    a             a            ACU   U     CUA       AAc      caucuuauaaac           agu 

Annotation confidence Low

Genome context

chr7: 208036-208264 [-]

Mature mtr-miR2630t-5p

• Accession: MIMAT0013392
• Description: Medicago truncatula mtr-miR2630t-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630t-3p

• Accession: MIMAT0054913
• Description: Medicago truncatula mtr-miR2630t-3p mature miRNA
• Sequence: 144 - AAGGACCAAAUCCAAUAUGAAUCA - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796