Dead hairpin entry

Stem-loop mtr-MIR2630t

Accession

MI0011939

Description

Medicago truncatula mtr-MIR2630t precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630t
(2 sentences)

Sequence

17103 reads, 158.0 reads per million, 111 experiments

cccugcaaaaauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucuuauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuacaaggaauaaaacaaaauacaaagguccaaaacccaauuuuuuauauuugcaggga
(((((((((.((((((.(((.((((((((.((((.(((((((((((((.((((((((((((...(((.(((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))).)))...)))))))))))).))))))))))))).)))).)))))))).))).)))))).))))))))).

Structure

-         a      u   U        U    G             a            cau   u     aaa       cua      ----------uc           cgu 
 cccugcaaa auagaa auu GGUUUUGG CCUU GUAUUUuguuuua uccuuguaaaau   uuc uauug   uuggucc   uaauau            auuuuaguccu   u
 ||||||||| |||||| ||| |||||||| |||| ||||||||||||| ||||||||||||   ||| |||||   |||||||   ||||||            |||||||||||    
 gggacguuu uauuuu uaa ccaaaacc ggaa cauaaaacaaaau aggaacauuuua   AAG AUAAC   AACCAGG   auuaua            uaaaaucaggg   u
a         a      u   c        u    a             a            ACU   U     CUA       AAc      caucuuauaaac           agu