Dead hairpin entry

Stem-loop mtr-MIR2630u

Accession

MI0011940

Description

Medicago truncatula mtr-MIR2630u precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630u
(2 sentences)

Sequence

20031 reads, 180.0 reads per million, 111 experiments

ccaugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaagaccaaauccaauaugauuuaaAUUUUACAAGGACUAAAAcaaaauacuaaggaccaaaaccaaauuuuuuauauuugcaggg
((.(((((((((((((.(((((((((((((((((((((((((((((((.((((((((((((....((((((((...((((((....((((((..(((((((((((........)))))))))))............))))))....))))))...)))))))).....)))))))))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure

-  a             u                               a            -cauu        aaa      ccua      ----------uc           cgu 
 cc ugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau     ucauauug   uugguc    uaauau            auuuuaguccu   u
 || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     ||||||||   ||||||    ||||||            |||||||||||    
 gg acguuuauauuuu uaaaccaaaaccaggaaucauaaaacAAAAU AGGAACAUUUUA     aguauaac   aaccag    auuaua            uaaaaucaggg   u
g  -             u                               C            aauuu        cua      aaac      caucuuauaaac           agu