Stem-loop mtr-MIR2630u

Accession

MI0011940

Description

Medicago truncatula mtr-MIR2630u precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630u
(2 sentences)

Sequence

ccaugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaagaccaaauccaauaugauuuaaauuuuacaaggacuaaaacaaaauacuaaggaccaaaaccaaauuuuuuauauuugcaggg
((.(((((((((((((.(((((((((((((((((((((((((((((((.((((((((((((....((((((((...((((((....((((((..(((((((((((........)))))))))))............))))))....))))))...)))))))).....)))))))))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure

-  a             u                               a            -cauu        aaa      ccua      ----------uc           cgu 
 cc ugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau     ucauauug   uugguc    uaauau            auuuuaguccu   u
 || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     ||||||||   ||||||    ||||||            |||||||||||    
 gg acguuuauauuuu uaaaccaaaaccaggaaucauaaaacaaaau aggaacauuuua     aguauaac   aaccag    auuaua            uaaaaucaggg   u
g  -             u                               c            aauuu        cua      aaac      caucuuauaaac           agu 

Annotation confidence Not enough data

Genome context

chr8: 20150884-20151112 [+]

Mature mtr-miR2630u

• Accession: MIMAT0013393
• Description: Medicago truncatula mtr-miR2630u mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796