Stem-loop mtr-MIR2630v

Accession

MI0011941

Description

Medicago truncatula mtr-MIR2630v precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630v
(2 sentences)

Sequence

27586 reads, 241.0 reads per million, 111 experiments

cccuacaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucauuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccauaaccaaauuuuuuauauuugcauggc
.((..(((((((((((.((((((((.((((((((((((((((((((((.((.(((((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...))))))))).)).)))))))))))))))))))))).)))))))).)))))))))))...)).

Structure

c  -ua           u        U                      a  a         cau         aaa       cua      ----------uc          -   u 
 cc   caaauauagaa auuUGGUU UGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg   guuuauauuuu uaaaccaa accaggaaccauaaaacAAAAU AG AACAUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
c  uac           u        u                      C  G         acu         cua       aac      caucuuauaaac          g   u 

Annotation confidence Low

Genome context

chr4: 38608657-38608885 [+]

Mature mtr-miR2630v-5p

• Accession: MIMAT0013394
• Description: Medicago truncatula mtr-miR2630v-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630v-3p

• Accession: MIMAT0054915
• Description: Medicago truncatula mtr-miR2630v-3p mature miRNA
• Sequence: 168 - AUUUUACAAGGACUAAAA - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796