Dead hairpin entry

Stem-loop mtr-MIR2630v

Accession

MI0011941

Description

Medicago truncatula mtr-MIR2630v precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630v
(2 sentences)

Sequence

27586 reads, 241.0 reads per million, 111 experiments

cccuacaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucauuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaAUUUUACAAGGACUAAAAcaaaauaccaaggaccauaaccaaauuuuuuauauuugcauggc
.((..(((((((((((.((((((((.((((((((((((((((((((((.((.(((((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...))))))))).)).)))))))))))))))))))))).)))))))).)))))))))))...)).

Structure

c  -ua           u        U                      a  a         cau         aaa       cua      ----------uc          -   u 
 cc   caaauauagaa auuUGGUU UGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg   guuuauauuuu uaaaccaa accaggaaccauaaaacAAAAU AG AACAUUUUA   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
c  uac           u        u                      C  G         acu         cua       aac      caucuuauaaac          g   u