Stem-loop mtr-MIR2631

Accession

MI0011942

Description

Medicago truncatula mtr-MIR2631 precursor miRNA

Sequence

ugugccacguggaccaaucaUGACACGCCACGUGGCACACUagaagacuaaauuuugagaguuugaaguuaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuauuaauuuaacaauuugguguacugguacacucaaauuuuuggauguaccauagaauuugccuuauuuuaauuuauuuauuucaauuauaaaauuuuguuuuuagugugccacaugucguguuaugauuguccacguggcacac
((((((((((((((.((((((((((((.((.(((((((((((((.(((.((((((((.....(((((((.((((((....((((..(((.(((((((((.(((...))).))))))))).)))..))))...........))))))...............................(((.((((.(((..((((...(((((((.((((....)))).))))))).......))))..))))))).)))...)))))))...)))))))).)))))))))))))))).)).)))))))))))))))))))))))))).

Structure

-              c            C  C             a   u        agagu       ----------------------------------------------------------------------------------------------------------u      -------uauu    cc   c         a   a 
 ugugccacguggac aaucaUGACACG CA GUGGCACACUaga gac aaauuuug     uugaagu                                                                                                           aaaaga           ucgu  aca uuuugguaa uaa  
 |||||||||||||| |||||||||||| || ||||||||||||| ||| ||||||||     |||||||                                                                                                           ||||||           ||||  ||| ||||||||| ||| a
 acacggugcaccug uuaguauugugc gu caccgugugauuu uug uuuaaaau     aacuuua                                                                                                           uuuucu           agua  ugu aaaauuauu auu  
c              -            u  a             -   u        --auu       uuuauuuaauuuuauuccguuuaagauaccauguagguuuuuaaacucacauggucaugugguuuaacaauuuaauuauuaauuuacucaaaaaaaaaaaaaauucu      uaaaaaaaaau    ac   c         a   u 

Annotation confidence Not enough data

Genome context

chr4: 16639232-16639550 [-]

Mature mtr-miR2631

• Accession: MIMAT0013395
• Description: Medicago truncatula mtr-miR2631 mature miRNA
• Sequence: 21 - UGACACGCCACGUGGCACACU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796