Stem-loop mtr-MIR2631

Accession

MI0011942

Description

Medicago truncatula mtr-MIR2631 precursor miRNA

Sequence

7818 reads, 74.0 reads per million, 111 experiments

ugugccacguggaccaaucaUGACACGCCACGUGGCACACUagaagacuaaauuuugagaguuugaaguuaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuauuaauuuaacaauuugguguacugguacacucaaauuuuUGGAUGUACCAUAGAAUUUgccuuauuuuaauuuauuuauuucaauuauaaaauuuuguuuuuagugugccacaugucguguuaugauuguccacguggcacac
((((((((((((((.((((((((((((.((.(((((((((((((.(((.((((((((.....(((((((.((((((....((((..(((.(((((((((.(((...))).))))))))).)))..))))...........))))))...............................(((.((((.(((..((((...(((((((.((((....)))).))))))).......))))..))))))).)))...)))))))...)))))))).)))))))))))))))).)).)))))))))))))))))))))))))).

Structure

-              c            C  C             a   u        agagu       uaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuau   u    c   uu    ----uac       c    a 
 ugugccacguggac aaucaUGACACG CA GUGGCACACUaga gac aaauuuug     uugaagu                                                                                                            uaa uuaa aau  ggug       ugguaca ucaa u
 |||||||||||||| |||||||||||| || ||||||||||||| ||| ||||||||     |||||||                                                                                                            ||| |||| |||  ||||       ||||||| ||||  
 acacggugcaccug uuaguauugugc gu caccgugugauuu uug uuuaaaau     aacuuua                                                                                                            auu aauu uua  ccgU       ACCAUGU GGUu u
c              -            u  a             -   u        --auu       ---------------------------------------------------------------------------------------------------------uuu   u    -   uu    UUAAGAU       A    u 

Annotation confidence Low

Genome context

chr4: 16639232-16639550 [-]

Mature mtr-miR2631-5p

• Accession: MIMAT0013395
• Description: Medicago truncatula mtr-miR2631-5p mature miRNA
• Sequence: 21 - UGACACGCCACGUGGCACACU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2631-3p

• Accession: MIMAT0054916
• Description: Medicago truncatula mtr-miR2631-3p mature miRNA
• Sequence: 216 - UGGAUGUACCAUAGAAUUU - 234
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796