miRBase entry: mtr-MIR2632a

Stem-loop mtr-MIR2632a


Accession
MI0011943
Description
Medicago truncatula mtr-MIR2632a precursor miRNA


Sequence

24453 reads, 243.0 reads per million, 111 experiments
aggucauuugaauuuucaucccugaaguuaCUAAUCCUUCCAAUCUGCCCCUGCAaauauuaaucauuugacuuuugguccuaauuacaucugauuaguaacuuaggaccaaaagucaaaugauuaauauuugcaagggcagAUUGGAAGGAUUAGUAACUUCAGcgacgaaaauucaaauggccua
(((((((((((((((((.((.(((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((.........)))).))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))).)).))))))))))))))))).

Structure
-                 a  c                             C                                 -    auc 
 aggucauuugaauuuuc uc cugaaguuaCUAAUCCUUCCAAUCUGCCC UGCAaauauuaaucauuugacuuuugguccuaa uuac   u
 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||   g
 uccgguaaacuuaaaag ag GACUUCAAUGAUUAGGAAGGUUAgacggg acguuuauaauuaguaaacugaaaaccaggauu aaug   a
a                 c  c                             a                                 c    auu 


Annotation confidence Low
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Genome context
chr5: 14319353-14319539 [+]

Database links

Mature mtr-miR2632a-5p

Accession MIMAT0013396
Description Medicago truncatula mtr-miR2632a-5p mature miRNA
Sequence 31 - CUAAUCCUUCCAAUCUGCCCCUGCA - 55
Evidence experimental
454 [1]

Mature mtr-miR2632a-3p

Accession MIMAT0054917
Description Medicago truncatula mtr-miR2632a-3p mature miRNA
Sequence 143 - AUUGGAAGGAUUAGUAACUUCAG - 165
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796