miRBase entry: mtr-MIR2632b

Stem-loop mtr-MIR2632b


Accession
MI0011944
Description
Medicago truncatula mtr-MIR2632b precursor miRNA


Sequence

15130 reads, 162.0 reads per million, 111 experiments
aagucauuugaauuuucaucccugaAGUUACUAAUCCUUCCAAUCUGCCccugcaaauauuaaucauuugacuuuugguaaugacagcccaccucagcaaaaaaaccuaauuaugaccaaaaguuaaaugauuaauauuugcagggcagauuagAAGGAUUAGUAACUUCAGAGACGAaaauucaaaugaacua
.((((((((((((((((.((.(((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((.((((..........................)))).))))))))))))))))))))))))))))))))))))).))))))))))))))))))).)).))))))))))))).))).

Structure
a   -             a  c                   C         c                            a    cagcccaccuca 
 agu cauuugaauuuuc uc cugaAGUUACUAAUCCUUC AAUCUGCCc ugcaaauauuaaucauuugacuuuuggu auga            g
 ||| ||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||             
 uca guaaacuuaaaAG AG GACUUCAAUGAUUAGGAAg uuagacggg acguuuauaauuaguaaauugaaaacca uauu            c
a   a             C  A                   a         -                            g    aauccaaaaaaa 


Annotation confidence Low
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Genome context
chr6: 12646949-12647142 [-]

Database links

Mature mtr-miR2632b-5p

Accession MIMAT0013397
Description Medicago truncatula mtr-miR2632b-5p mature miRNA
Sequence 26 - AGUUACUAAUCCUUCCAAUCUGCC - 49
Evidence experimental
454 [1]

Mature mtr-miR2632b-3p

Accession MIMAT0054918
Description Medicago truncatula mtr-miR2632b-3p mature miRNA
Sequence 155 - AAGGAUUAGUAACUUCAGAGACGA - 178
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796