Stem-loop mtr-MIR2633

Accession

MI0011946

Description

Medicago truncatula mtr-MIR2633 precursor miRNA

Sequence

13649 reads, 157.0 reads per million, 109 experiments

uugacuaaacaauguuauguuAGUCUUGAUCAAAGUGUGAUCucuguagucccuaacuucuaagguuagcggauucuaagaUGACAUUUUGCUCCAGAUUCAcauaacguuuauucau
.(((.(((((...(((((((.(((((.((.((((((((.((((..(.((((((((((((...))))))).))))))..)))).)))))))).)).))))).)))))))))))).))).

Structure

u   c     aau       u     U  U        G    cu u     -       c 
 uga uaaac   guuaugu AGUCU GA CAAAGUGU AUCu  g agucc cuaacuu  
 ||| |||||   ||||||| ||||| || |||||||| ||||  | ||||| ||||||| u
 acu auuug   caauacA UUAGA CU GUUUUACA Uaga  c uuagg gauugga  
u   u     ---       C     C  C        G    au -     c       a 

Annotation confidence High

Genome context

chr5: 25828393-25828510 [+]

Mature mtr-miR2633-5p

• Accession: MIMAT0054920
• Description: Medicago truncatula mtr-miR2633-5p mature miRNA
• Sequence: 22 - AGUCUUGAUCAAAGUGUGAUC - 42
• Evidence: experimental ; unknown

Mature mtr-miR2633-3p

• Accession: MIMAT0013399
• Description: Medicago truncatula mtr-miR2633-3p mature miRNA
• Sequence: 82 - UGACAUUUUGCUCCAGAUUCA - 102
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796