miRBase entry: mtr-MIR2635

Stem-loop mtr-MIR2635


Accession
MI0011948
Description
Medicago truncatula mtr-MIR2635 precursor miRNA


Sequence

2260 reads, 21.0 reads per million, 111 experiments
aaauauuagauuuaauauuauuguCAACGUGACUAGAAUAUAAAGAGUcacacacaaagaacggucaaaagagaaauauauaagugugacuuauauagguaugcguuuAGUAAAUAACACUAAUUAGUUAGCaaaauauuaaacucguuauug
.((((...(((((((((((.((((.(((((.(((...(((((...((((((((...........((....))...........))))))))))))).)))..))))).......((((........))))))))))))))))).))..)))).

Structure
a    uua  -         a    ----------------------C     -G   AGA     AAG        acaaagaacgg  a 
 aaua   ga uuuaauauu uugu                       AACGU  ACU   AUAUA   AGUcacac           uc a
 ||||   || ||||||||| ||||                       |||||  |||   |||||   ||||||||           ||  
 uuau   cu aaauuauaa aaCG                       uugcg  ugg   uauau   ucagugug           ag a
g    -ug  c         -    AUUGAUUAAUCACAAUAAAUGAu     ua   --a     ---        aauauauaaag  a 


Annotation confidence Not enough data
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Genome context
chr5: 4841515-4841667 [+]

Database links

Mature mtr-miR2635-5p

Accession MIMAT0013401
Description Medicago truncatula mtr-miR2635-5p mature miRNA
Sequence 25 - CAACGUGACUAGAAUAUAAAGAGU - 48
Evidence experimental
454 [1]

Mature mtr-miR2635-3p

Accession MIMAT0054922
Description Medicago truncatula mtr-miR2635-3p mature miRNA
Sequence 109 - AGUAAAUAACACUAAUUAGUUAGC - 132
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796