Stem-loop mtr-MIR2638b

Accession

MI0011952

Description

Medicago truncatula mtr-MIR2638b precursor miRNA

Sequence

guuacuaauccuuccaaucugccacugcaaauauuaaucauuugaaaaauaguccuaauuacaucugauuaguaacuuuagggaugaaaauucaaaugauauauauuugcagggacaaaagaccuauuuaagccaaccaccucguccaaucaucacuugccacauaggcaccacgucgcuaaugauagcccaucucagcaaaaaaaaacuaauuaggaccaaaagucaaAUGAUUAAUAUUUGCAGUGGCagauuggaaugauuaguaa
.(((((((((.((((((((((((((((((((((((((((((((((......((((((((((...((((.........))))((((((.....((((((.....)))))).(((.........)))................))))))..........((((.....)))).......((((....))))....................))))))))))......)))))))))))))))))))))))))))))))))).)))))))))

Structure

g         c                                  aaaaua          ------------------------------------------caucugauuaguaacuuuag      ---------------------------aaauu      a 
 uuacuaauc uuccaaucugccacugcaaauauuaaucauuuga      guccuaauua                                                              ggauga                                caaaug u
 ||||||||| ||||||||||||||||||||||||||||||||||      ||||||||||                                                              ||||||                                |||||| a
 aaugauuag aagguuagaCGGUGACGUUUAUAAUUAGUAaacu      caggauuaau                                                              ccugcu                                guuuau u
-         u                                  gaaaac          caaaaaaaaacgacucuacccgauaguaaucgcugcaccacggauacaccguucacuacuaa      ccaccaaccgaauuuauccagaaaacagggac      a 

Annotation confidence Not enough data

Genome context

chr5: 6758482-6758750 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2638b

Mature mtr-miR2638b

• Accession: MIMAT0013405
• Description: Medicago truncatula mtr-miR2638b mature miRNA
• Sequence: 230 - AUGAUUAAUAUUUGCAGUGGC - 250
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796