miRBase entry: mtr-MIR2642

Stem-loop mtr-MIR2642


Accession
MI0011957
Description
Medicago truncatula mtr-MIR2642 precursor miRNA


Sequence

3194 reads, 31.0 reads per million, 111 experiments
uuugauugguuaaaauuuacAUGAGUUUCAUCAAAUCAUGUgguucccauauaaauuuuguGAGACGUAUGUGAACUUUAACCAAucaaag
((((((((((((((.((((((((.(((((((.((((.((((((...))))))..)))).))))))).)))))))).)))))))))))))).

Structure
-              a        A       C    -C      u 
 uuugauugguuaaa uuuacAUG GUUUCAU AAAU  AUGUgg  
 |||||||||||||| |||||||| ||||||| ||||  |||||| u
 aaacuAACCAAUUU AAGUGUAU CAGAGug uuua  uauacc  
g              C        G       u    aa      c 


Annotation confidence Low
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Genome context
chr3: 1759989-1760079 [+]

Database links

Mature mtr-miR2642-5p

Accession MIMAT0013410
Description Medicago truncatula mtr-miR2642-5p mature miRNA
Sequence 21 - AUGAGUUUCAUCAAAUCAUGU - 41
Evidence experimental
454 [1]

Mature mtr-miR2642-3p

Accession MIMAT0054928
Description Medicago truncatula mtr-miR2642-3p mature miRNA
Sequence 62 - GAGACGUAUGUGAACUUUAACCAA - 85
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796